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Cancer Genome Research

Overcoming the complexities of cancer research

Cancer researchers today face rising pressure to deliver faster, more reliable results while working with increasingly challenging sample types. Liquid biopsy represents a breakthrough approach, but the technical hurdles are real: cfDNA concentrations can be vanishingly low, ctDNA detection requires extreme sensitivity, and miRNA analysis demands specialized protocols.

The reality of modern cancer genomics

Working with plasma, serum, and urine samples means dealing with degraded nucleic acids, contaminating proteins, and sample-to-sample variability that can derail entire studies. FFPE tissues add another layer of complexity with cross-linking artifacts and fragmented DNA.

Meanwhile, exosome isolation remains technically demanding and time-intensive.

Our integrated approach combines automation platforms with specialized reagents, providing complete workflow solutions that adapt to evolving research needs and scale with your project requirements. We have the tools for your complete workflow including:

  • Reference standards
  • Nucleic acid extraction
  • QC and analysis solutions
  • Library preparation reagents
  • Automated solutions

For research use only. Not for use in diagnostic procedures.

Revvity Inc. does not endorse or make recommendations with respect to research, medication, or treatments. All information presented is for informational purposes only and is not intended as medical advice. For country specific recommendations, please consult your local health care professionals.

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Explore applications

Liquid biopsy

Cell-free DNA (cfDNA) and microRNA (miRNA) enable non-invasive cancer research and analysis of circulating tumor-derived nucleic acids. Circulating tumor DNA (ctDNA) provides real-time genomic profiling capabilities, with mutation analysis predicting treatment resistance in prostate cancer1. Epigenetic markers including DNA methylation patterns demonstrate early detection potential in colorectal cancer screening2.

Sample diversification beyond blood enhances biomarker accessibility. Cerebrospinal fluid cfDNA analysis enables direct monitoring of central nervous system tumors with reduced systemic interference3. Circulating miRNAs offer functional insights into tumor biology through regulatory pathway analysis.

Solid tumor

Cell-free DNA (cfDNA) extracted from formalin-fixed paraffin-embedded (FFPE) tissues enable comprehensive genomic profiling of archived cancer specimens for retrospective biomarker discovery.

Genomic profiling of FFPE samples identifies critical cancer biology insights. Comprehensive analysis distinguishes sporadic early-onset colorectal adenocarcinoma through unique mutational patterns compared to age-related disease4. Clonal evolution studies demonstrate how replication stress tolerance and immune responses influence metastatic site preference, with liver and lung recurrence showing distinct molecular signatures in pancreatic cancer5.

Cancer genome research workflow

Reference standards

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Mimix™

Synthetic controls that replicate target sequences for quantitatively assessing assay performance and verifying end-to-end workflows.

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Nucleic acid extraction

Nucleic Acid Isolation

chemagic™ Technology

Magnetic bead-based automated isolation delivering high-purity DNA/RNA from diverse sample types.

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Quality control

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Lapchip™ Quality control

Automated sizing and quantification of DNA/RNA samples using minimal volumes for QC workflows.

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Library prep

Library prep kits

Nextflex™

Streamlined NGS library preparation for consistent, high-quality sequencing.

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NGS adapters and blockers

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UDI-UMI adapters

NGS adapters with UDI/UMI options for Illumina and Element Biosciences sequencing platforms, plus universal blockers that enhance hybridization specificity.

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Automation

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Liquid Handling Workstations

With dedicated workstations designed for a diverse variety of applications, along with the ability to customize the liquid handling workstations.

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Ready to transform your research?

Our automated workflows are designed to enhance your research capabilities while saving time and improving reproducibility. We can help accelerate your research with:

  • Expertise you can trust: Our specialized team brings deep, hands-on experience in cfDNA and miRNA workflows, ensuring that every step is executed with precision
  • Cutting-edge innovation: We don't just keep up with technology, we lead it. Our solutions incorporate the latest scientific advancements, giving you access to some of the most sophisticated tools available in cancer research today.
  • Customized solutions: We understand that every research project is unique. Our workflows are designed to support a wide range of applications and research objectives.

To learn more about how our automated workflows can enhance your research, please check the additional resources below. We are here to provide you with detailed information and support tailored to your needs. Contact us to discuss and realize your entire cancer research workflow.

Featured products

chemagic Kits Components
chemagic cfDNA Kits
Part number: CMG-1396, CMG-1302, CMG-1304, CMG-1444, CMG-134, CMG-1318, CMG-2025
View details
chemagic Kits 700x700
chemagic miRNA Kits
Part number: CMG-124, CMG-1224, CMG-2042, CMG-1223
View details
chemagic 360 Instrument
chemagic 360 Instrument
Part number: 2024-0020
View details
Assays for protein and nucleic acid characterization.
LabChip cfDNA Assay
Part number: CLS157242
View details
LabChip GX Touch Nucleic Acid Analyzer
LabChip GX Touch Nucleic Acid Analyzer
Part number: CLS138162, CLS137031
View details
Robust library prep kit that generates high-complexity libraries for NGS on Illumina and Element platforms.
NEXTFLEX Cell Free DNA-Seq Library Prep Kit 2.0
Part number: NOVA-5150-01, NOVA-5150-02
View details
Robust library prep kit that generates high-complexity libraries for NGS on Illumina and Element platforms.
NEXTFLEX Rapid Directional RNA-Seq Kit 2.0
Part number: NOVA-5198-01, NOVA-5198-02, NOVA-5198-03, NOVA-5198-53
View details
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Featured resources

Technical Note

Automated circulating cell-free DNA purification with the chemagic 360 instrument

Learn more
Case Study

Driving precision oncology with chemagic technology

Learn more
Webinar

The fascinating world of cell-free DNA (cfDNA) isolation and digital PCR analysis

Learn more
Application Note

High-throughput, end-to-end Cell Free DNA (cfDNA) analysis workflow from plasma

Learn more

References

  1. Yu J, Cho E, Choi J, Lim JE, Lee J, Kang M, Sung HH, Jeong BC, Seo SI, Jeon SS, Lee HM, Jeon HG. Genomic mutation profiling using liquid biopsy in Korean patients with prostate cancer: Circulating tumor DNA mutation predicts the development of castration resistance. Investig Clin Urol. 2021 Mar;62(2):224-232.
  2. Puddu, F., Johansson, A., Modat, A. et al. 5-methylcytosine and 5-hydroxymethylcytosine are synergistic biomarkers for early detection of colorectal cancer. Commun Med 6, 15 (2026).
  3. Song, Ho Hyun et al. Optimization of a Protocol for Isolating Cell-free DNA From Cerebrospinal Fluid." Annals of laboratory medicine vol. 44,3 (2024): 294-298.
  4. Link, J.M., Eng, J.R., Pelz, C. et al. Ongoing replication stress tolerance and clonal T cell responses distinguish liver and lung recurrence and outcomes in pancreatic cancer. Nat Cancer 6, 123–144 (2025).
  5. Ponvilawan, B., Sakornsakolpat, P., Pongpaibul, A. et al. Comprehensive genomic analysis in sporadic early-onset colorectal adenocarcinoma patients. BMC Cancer 25, 349 (2025).
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